| Citation: |
| [1] |
S. R. Arridge, Optical tomography in medical imaging, Inv. Probl., 15 (1999), R41-R93.doi: 10.1088/0266-5611/15/2/022. |
| [2] |
S. R. Arridge, J. P. Kaipio, V. Kolehmainen, M. Schweiger, E. Somersalo, T. Tarvainen and M. Vauhkonen, Approximation errors and model reduction with an application in optical diffusion tomography, Inv. Probl., 22 (2006), 175-195.doi: 10.1088/0266-5611/22/1/010. |
| [3] |
D. Calvetti, J. P. Kaipio and E. Somersalo, Aristotelian prior boundary conditions, Int. J. Math., 1 (2006), 63-81. |
| [4] |
D. Calvetti and E. Somersalo, An Introduction to Bayesian Scientific Computing Ten Lectures on Subjective Computing, Springer, 2007. |
| [5] |
W. F. Cheong, S. A. Prahl and A. J. Welch, A review of the optical properties of biological tissues, IEEE J. Quant. Electron., 26 (1990), 2166-2185.doi: 10.1109/3.64354. |
| [6] |
A. Corlu, R. Choe, T. Durduran, M. A. Rosen, M. Schweiger, S. Arridge, M. D. Schnall and A. G. Yodh, Three-dimensional in vivo fluorescence diffuse optical tomography of breast cancer in humans, Opt. Exp., 15 (2007), p6696.doi: 10.1364/OE.15.006696. |
| [7] |
T. Correia, N. Ducros, C. D'Andrea, M. Schweiger and S. Arridge, Quantitative fluorescence diffuse optical tomography in the presence of heterogeneities, Opt. Lett., 38 (2013), 1903-1905.doi: 10.1364/OL.38.001903. |
| [8] |
J. P. Culver, R. Choe, M. J. Holboke, L. Zubkov, T. Durduran, A. Slemp, V. Ntziachristos, D. N. Pattanayak, B. Chance and A. G. Yodh, Three-dimensional diffuse optical tomography in the parallel plane transmission geometry: evaluation of a hybrid frequency domain/continuous wave clinical system for breast imaging, Med. Phys., 30 (2003), 235-247.doi: 10.1118/1.1534109. |
| [9] |
S. C. Davis, K. S. Samkoe, J. A. O'Hara, S. L. Gibbs-Strauss, H. L. Payne, P. J. Hoopes, K. D. Paulsen and B. W. Pogue, MRI-coupled fluorescence tomography quantifies EGFR activity in brain tumors, Acad. Radiol., 17 (2010), 271-276.doi: 10.1016/j.acra.2009.11.001. |
| [10] |
B. Dogdas, D. Stout, A. Chatziioannou and R. M. Leahy, Digimouse: A 3D whole body mouse atlas from ct and cryosection data, Phys. Med. Biol., 52 (2007), 577-587.doi: 10.1088/0031-9155/52/3/003. |
| [11] |
S. J. Erickson, S. L. Martinez, J. DeCerce, A. Romero, L. Caldera and A. Godavarty, Three-dimensional fluorescence tomography of human breast tissues in vivo using a hand-held optical imager, Phys. Med. Biol., 58 (2013), 1563. |
| [12] |
Q. Fang, Digimouse atlas FEM mesh, http://mcx.sourceforge.net/cgi-bin/index.cgi?MMC/DigimouseMesh. |
| [13] |
E. E. Graves, J. Ripoll, R. Weissleder and V. Ntziachristos, A submillimeter resolution fluorescence molecular imaging system for small animal imaging, Med. Phys., 30 (2003), 901-911.doi: 10.1118/1.1568977. |
| [14] |
J. Heino and E. Somersalo, A modelling error approach for the estimation of optical absorption in the presence of anisotropies, Phys. Med. Biol., 49 (2004), 4785-4798.doi: 10.1088/0031-9155/49/20/009. |
| [15] |
J. Heino, E. Somersalo and J. Kaipio, Compensation for geometric mismodelling by anisotropies in optical tomography, Opt. Express, 13 (2005), 296-308.doi: 10.1364/OPEX.13.000296. |
| [16] |
J. Huttunen and J. Kaipio, Approximation errors in nostationary inverse problems, Inv. Probl. Imag., 1 (2007), 77-93.doi: 10.3934/ipi.2007.1.77. |
| [17] |
J. Huttunen and J. Kaipio, Approximation error analysis in nonlinear state estimation with an application to state-space identification, Inv. Probl., 23 (2007), 2141-2157.doi: 10.1088/0266-5611/23/5/019. |
| [18] |
A. Ishimaru, Wave Propagation and Scattering in Random Media, Academic, New York, 1997.doi: 10.1109/9780470547045. |
| [19] |
S. L. Jacques, Optical properties of biological tissues: A review, Phys. Med. Biol., 58 (2013), p5007.doi: 10.1088/0031-9155/58/11/R37. |
| [20] |
J. Kaipio and V. Kolehmainen, Approximate marginalization over modelling errors and uncertainites in inverse problems, in Bayesian Theory and Applications (eds. P. Damien, P. Dellaportas, N. G. Polson and D. A. Stephens), Oxford University Press, 2013, 644-672.doi: 10.1093/acprof:oso/9780199695607.003.0032. |
| [21] |
J. Kaipio and E. Somersalo, Statistical and Computational Inverse Problems, Springer, New York, 2005. |
| [22] |
J. Kaipio and E. Somersalo, Statistical inverse problems: Discretization, model reduction and inverse crimes, J. Comput. Appl. Math., 198 (2007), 493-504.doi: 10.1016/j.cam.2005.09.027. |
| [23] |
A. Koenig, L. Hervé, V. Josserand, M. Berger, J. Boutet, A. Da Silva, J. M. Dinten, P. Peltié, J. L. Coll and P. Rizo, In vivo mice lung tumor follow-up with fluorescence diffuse optical tomography, J. Biomed. Opt., 13 (2008), 011008.doi: 10.1117/1.2884505. |
| [24] |
V. Kolehmainen, M. Schweiger, I. Nissilä, T. Tarvainen, S. R. Arridge and J. P. Kaipio, Approximation errors and model reduction in three-dimensional diffuse optical tomography, J. Opt. Soc. Am. A., 26 (2009), 2257-2268.doi: 10.1364/JOSAA.26.002257. |
| [25] |
V. Kolehmainen, T. Tarvainen, S. R. Arridge and J. P. Kaipio, Marginalization of uninteresting distributed parameters in inverse problems - application to diffuse optical tomography, Int. J. Uncertainty Quantification, 1 (2011), 1-17.doi: 10.1615/Int.J.UncertaintyQuantification.v1.i1.10. |
| [26] |
V. Kolehmainen, A. Vanne, S. Siltanen, S. Jarvenpaa, J. Kaipio, M. Lassas and M. Kalke, Parallelized bayesian inversion for three-dimensional dental x-ray imaging, IEEE Trans. Med. Imag., 25 (2006), 218-228.doi: 10.1109/TMI.2005.862662. |
| [27] |
A. Lehikoinen, S. Finsterle, A. Voutilainen, L. M. Heikkinen, M. Vauhkonen and J. P. Kaipio, Approximation errors and truncation of computational domains with application to geophysical tomography, Inv. Probl. Imag., 1 (2007), 371-389.doi: 10.3934/ipi.2007.1.371. |
| [28] |
C. Lieberman, K. Willcox and O. Ghattas, Parameter and state model reduction for large-scale statistical inverse problems, SIAM J. Sci. Comput., 32 (2010), 2523-2542.doi: 10.1137/090775622. |
| [29] |
Y. Lin, H. Yan, O. Nalcioglu and G. Gulsen, Quantitative fluorescence tomography with functional and structural a priori information, Appl. Opt., 48 (2009), 1328-1336.doi: 10.1364/AO.48.001328. |
| [30] |
A. Martin, J. Aguirre, A. Sarasa-Renedo, D. Tsoukatou, A. Garofalakis, H. Meyer, C. Mamalaki, J. Ripoll and A. M. Planas, Imaging changes in lymphoid organs in vivo after brain ischemia with three-dimensional fluorescence molecular tomography in transgenic mice expressing green fluorescent protein in T lymphocytes, Mol. Imag., 7 (2008). |
| [31] |
M. Mozumder, T. Tarvainen, S. R. Arridge, J. Kaipio and V. Kolehmainen, Compensation of optode sensitivity and position errors in diffuse optical tomography using the approximation error approach, Biomed. Opt. Express, 4 (2013), 2015-2031.doi: 10.1364/BOE.4.002015. |
| [32] |
M. Mozumder, T. Tarvainen, J. P. Kaipio, S. R. Arridge and V. Kolehmainen, Compensation of modeling errors due to unknown domain boundary in diffuse optical tomography, J. Opt. Soc. Am. A, 31 (2014), 1847-1855.doi: 10.1364/JOSAA.31.001847. |
| [33] |
A. Nissinen, L. Heikkinen and J. Kaipio, Approximation errors in electrical impedance tomography - an experimental study, Meas. Sci. Technol., 19 (2008). |
| [34] |
A. Nissinen, L. M. Heikkinen, V. Kolehmainen and J. P. Kaipio, Compensation of errors due to discretization, domain truncation and unknown contact impedances in electrical impedance tomography, Meas. Sci. Technol., 20 (2009), 105504.doi: 10.1088/0957-0233/20/10/105504. |
| [35] |
V. Ntziachristos, J. Ripoll, L. V. Wang and R. Weissleder, Looking and listening to light: The evolution of whole-body photonic imaging, Nat. Biotech., 23 (2005), 313-320.doi: 10.1038/nbt1074. |
| [36] |
V. Ntziachristos, E. A. Schellenberger, J. Ripoll, D. Yessayan, E. Graves, A. Bogdanov, L. Josephson and R. Weissleder, Visualization of antitumor treatment by means of fluorescence molecular tomography with an annexin V-Cy5.5 conjugate, Proc. Natl. Acad. Sci. U.S.A., 101 (2004), 12294-12299.doi: 10.1073/pnas.0401137101. |
| [37] |
V. Ntziachristos, C. H. Tung, C. Bremer and R. Weissleder, Fluorescence molecular tomography resolves protease activity in vivo, Nat. Med., 8 (2002), 757-761.doi: 10.1038/nm729. |
| [38] |
V. Ntziachristos and R. Weissleder, Experimental three-dimensional fluorescence reconstruction of diffuse media by use of a normalized Born approximation, Opt. Lett., 26 (2001), 893-895.doi: 10.1364/OL.26.000893. |
| [39] |
S. Patwardhan, S. Bloch, S. Achilefu and J. Culver, Time-dependent whole-body fluorescence tomography of probe bio-distributions in mice, Opt. Express, 13 (2005), 2564-2577.doi: 10.1364/OPEX.13.002564. |
| [40] |
S. Pursiainen, Two-stage reconstruction of a circular anomaly in electrical impedance tomography, Inv. Probl., 22 (2006), 1689-1703.doi: 10.1088/0266-5611/22/5/010. |
| [41] |
T. J. Rudge, V. Y. Soloviev and S. R. Arridge, Fast image reconstruction in fluoresence optical tomography using data compression, Opt. Lett., 35 (2010), 763-765.doi: 10.1364/OL.35.000763. |
| [42] |
H. Rue and L. Held, Gaussian Markov Random Fields: Theory and Applications, Monographs on Statistics and Applied Probability, 104, Chapman & Hall, London, 2005.doi: 10.1201/9780203492024. |
| [43] |
R. Schulz, J. Ripoll and V. Ntziachristos, Experimental fluorescence tomography of tissues with noncontact measurements, IEEE Trans. Med. Imag., 23 (2004), 492-500.doi: 10.1109/TMI.2004.825633. |
| [44] |
M. Schweiger, S. R. Arridge and I. Nissilä, Gauss-Newton method for image reconstruction in diffuse optical tomography, Phys. Med. Biol., 50 (2005), 2365-2386.doi: 10.1088/0031-9155/50/10/013. |
| [45] |
A. Seppanen, A. Voutilainen and J. P. Kaipio, State estimation in process tomography - reconstruction of velocity fields using eit, Inv. Probl., 25 (2009), 085009, 24pp.doi: 10.1088/0266-5611/25/8/085009. |
| [46] |
H. Shih and V. Ntziachristos, In vivo characterization of Her-2/neu carcinogenesis in mice using fluorescence molecular tomography, Proc. Biomed. Opt., OSA (2006), paper TuC1.doi: 10.1364/BIO.2006.TuC1. |
| [47] |
M. Solomon, B. R. White, R. E. Nothdruft, W. Akers, G. Sudlow, A. T. Eggebrecht, S. Achilefu and J. P. Culver, Video-rate fluorescence diffuse optical tomography for in vivo sentinel lymph node imaging, Biomed. Opt. Express, 2 (2011), 3267-3277.doi: 10.1364/BOE.2.003267. |
| [48] |
V. Y. Soloviev, C. D'Andrea, G. Valentini, R. Cubeddu and S. R. Arridge, Combined reconstruction of fluorescent and optical parameters using time-resolved data, Appl. Opt., 48 (2009), 28-36.doi: 10.1364/AO.48.000028. |
| [49] |
Y. Tan and H. Jiang, Diffuse optical tomography guided quantitative fluorescence molecular tomography, Appl. Opt., 47 (2008), 2011-2016.doi: 10.1364/AO.47.002011. |
| [50] |
T. Tarvainen, V. Kolehmainen, A. Pulkkinen, M. Vauhkonen, M. Schweiger, S. R. Arridge and J. P. Kaipio, An approximation error approach for compensating for modelling errors between the radiative transfer equation and the diffusion approximation in diffuse optical tomography, Inv. Probl., 26 (2010), 015005, 18pp.doi: 10.1088/0266-5611/26/1/015005. |
| [51] |
S. V. D. Ven, A. Wiethoff, T. Nielsen, B. Brendel, M. V. D. Voort, R. Nachabe, M. Mark, M. Beek, L. Bakker, L. Fels, S. Elias, P. Luijten and W. Mali, A novel fluorescent imaging agent for diffuse optical tomography of the breast: First clinical experience in patients, Mol. Imag. Biol., 12 (2010), 343-348. |