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doi: 10.3934/jimo.2020160

The approximation algorithm based on seeding method for functional $ k $-means problem†

Min Li 1, , Yishui Wang 2, , Dachuan Xu 3, and  Dongmei Zhang 4,,

1. 

School of Mathematics and Statistics, Shandong Normal University, Jinan 250014, China
2. 

Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, 1068 Xueyuan Avenue, Shenzhen University Town, Shenzhen 518055, China
3. 

Department of Operations Research and Information Engineering, Beijing University of Technology, Beijing 100124, China
4. 

School of Computer Science and Technology, Shandong Jianzhu University, Jinan 250101, China

* Corresponding author: Dongmei Zhang

† A preliminary version of this article appeared in Proceedings of COCOON 2019, pp. 387-396.

Received  March 2020 Revised  July 2020 Published  November 2020

Different from the classical $ k $-means problem, the functional $ k $-means problem involves a kind of dynamic data, which is generated by continuous processes. In this paper, we mainly design an $ O(\ln\; k) $-approximation algorithm based on the seeding method for functional $ k $-means problem. Moreover, the numerical experiment presented shows that this algorithm is more efficient than the functional $ k $-means clustering algorithm.

Keywords: functional $ k $-means, $ k $-means, seeding algorithm, approximation algorithm.
Mathematics Subject Classification: Primary: 90C27; Secondary: 68W25.
Citation: Min Li, Yishui Wang, Dachuan Xu, Dongmei Zhang. The approximation algorithm based on seeding method for functional $ k $-means problem†. Journal of Industrial & Management Optimization, doi: 10.3934/jimo.2020160
References:
[1]

C. Abraham, P. A. Cornillon, E. Matzner-Løber and N. Molinari, Unsupervised curve clustering using B-splines, Scandinavian Journal of Statistics, 30 (2003), 581-595.  doi: 10.1111/1467-9469.00350.  Google Scholar

[2]

S. Ahmadian, A. Norouzi-Fard, O. Svensson and J. Ward, Better guarantees for $k$-means and Euclidean $k$-median by primal-dual algorithms, SIAM Journal on Computing, (2019), FOCS17-97–FOCS17-156. doi: 10.1137/18M1171321.  Google Scholar

[3]

D. Aloise, A. Deshpande, P. Hansen and P. Popat, NP-hardness of Euclidean sum-of-squares clustering, Machine Learning, 75 (2009), 245-248.  doi: 10.1007/s10994-009-5103-0.  Google Scholar

[4]

D. Arthur and S. Vassilvitskii, $K$-means++: The advantages of careful seeding, Proceedings of the Eighteenth Annual ACM-SIAM Symposium on Discrete Algorithms, SIAM, (2007), 1027–1035.  Google Scholar

[5]

M. Boullé, Functional data clustering via piecewise constant nonparametric density estimation, Pattern Recognition, 45 (2012), 4389-4401.   Google Scholar

[6]

C. Bouveyron and C. Brunet-Saumard, Model-based clustering of high-dimensional data: A review, Computational Statistics & Data Analysis, 71 (2014), 52-78.  doi: 10.1016/j.csda.2012.12.008.  Google Scholar

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R. Gamasaee and M. Zarandi, A new dirichlet process for mining dynamic patterns in functional data, Information Sciences, 405 (2017), 55-80.  doi: 10.1016/j.ins.2017.04.008.  Google Scholar

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S. Har-Peled and B. Sadri, How fast is the $k$-means method?, Algorithmica, 41 (2005), 185-202.  doi: 10.1007/s00453-004-1127-9.  Google Scholar

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J. Jacques and C. Preda, Functional data clustering: A survey, Advances in Data Analysis and Classification, 8 (2014), 231-255.  doi: 10.1007/s11634-013-0158-y.  Google Scholar

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S. Ji, D. Xu, L. Guo, M. Li and D. Zhang, The seeding algorithm for spherical $k$-means clustering with penalties, Journal of Combinatorial Optimization, 2020. doi: 10.1007/s10878-020-00569-1.  Google Scholar

[11]

M. Kayano, K. Dozono and S. Konishi, Functional cluster analysis via orthonormalized Gaussian basis expansions and its application, Journal of Classification, 27 (2010), 211-230.  doi: 10.1007/s00357-010-9054-8.  Google Scholar

[12]

M. Li, The bi-criteria seeding algorithms for two variants of $k$-means problem, Journal of Combinatorial Optimization, 2020. doi: 10.1007/s10878-020-00537-9.  Google Scholar

[13]

M. Li, D. Xu, J. Yue, D. Zhang and P. Zhang, The seeding algorithm for $k$-means problem with penalties, Journal of Combinatorial Optimization, 39 (2020), 15-32.  doi: 10.1007/s10878-019-00450-w.  Google Scholar

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S. Lloyd, Least squares quantization in PCM, IEEE Transactions on Information Theory, 28 (1982), 129-137.  doi: 10.1109/TIT.1982.1056489.  Google Scholar

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Y. Meng, J. Liang, F. Cao and Y. He, A new distance with derivative information for functional $k$-means clustering algorithm, Information Sciences, 463/464 (2018), 166-185.  doi: 10.1016/j.ins.2018.06.035.  Google Scholar

[16]

R. Ostrovsky, Y. Rabani, L. Schulman and C. Swamy, The effectiveness of Lloyd-type methods for the $k$-means problem, Journal of the ACM, 59 (2012), 28: 1–28: 22. doi: 10.1145/2395116.2395117.  Google Scholar

[17]

G. Ozturk and M. Ciftci, Clustering based polyhedral conic functions algorithm in classification, Journal of Industrial & Management Optimization, 11 (2015), 921-932.  doi: 10.3934/jimo.2015.11.921.  Google Scholar

[18]

J. Park and J. Ahn, Clustering multivariate functional data with phase variation, Biometrics, 73 (2017), 324-333.  doi: 10.1111/biom.12546.  Google Scholar

[19]

J. Peng and H. G. Müller, Distance-based clustering of sparsely observed stochastic processes, with applications to online auctions, The Annals of Applied Statistics, 2 (2008), 1056-1077.  doi: 10.1214/08-AOAS172.  Google Scholar

[20]

C. Preda, G. Saporta and C. Lévéder, PLS classification of functional data, Computational Statistics, 22 (2007), 223-235.  doi: 10.1007/s00180-007-0041-4.  Google Scholar

[21]

T. Tarpey and K. K. Kinateder, Clustering functional data, Journal of Classification, 20 (2003), 93-114.  doi: 10.1007/s00357-003-0007-3.  Google Scholar

[22]

D. Wei, A constant-factor bi-criteria approximation guarantee for $k$-means++, Proceedings of the Thirtieth International Conference on Neural Information Processing Systems, (2016), 604–612. Google Scholar

[23]

X. Wu, V. Kumar, J. Quinlan, J. Ross Ghosh, Q. Yang, H. Motoda, G. J. McLachlan, A. Ng, B. Liu, P.S. Yu, Z. H. Zhou, M. Steinbach, D. J. Hand and D. Steinberg, Top 10 algorithms in data mining, Knowledge and Information Systems, 14 (2008), 1-37.  doi: 10.1007/s10115-007-0114-2.  Google Scholar

show all references

References:
[1]

C. Abraham, P. A. Cornillon, E. Matzner-Løber and N. Molinari, Unsupervised curve clustering using B-splines, Scandinavian Journal of Statistics, 30 (2003), 581-595.  doi: 10.1111/1467-9469.00350.  Google Scholar

[2]

S. Ahmadian, A. Norouzi-Fard, O. Svensson and J. Ward, Better guarantees for $k$-means and Euclidean $k$-median by primal-dual algorithms, SIAM Journal on Computing, (2019), FOCS17-97–FOCS17-156. doi: 10.1137/18M1171321.  Google Scholar

[3]

D. Aloise, A. Deshpande, P. Hansen and P. Popat, NP-hardness of Euclidean sum-of-squares clustering, Machine Learning, 75 (2009), 245-248.  doi: 10.1007/s10994-009-5103-0.  Google Scholar

[4]

D. Arthur and S. Vassilvitskii, $K$-means++: The advantages of careful seeding, Proceedings of the Eighteenth Annual ACM-SIAM Symposium on Discrete Algorithms, SIAM, (2007), 1027–1035.  Google Scholar

[5]

M. Boullé, Functional data clustering via piecewise constant nonparametric density estimation, Pattern Recognition, 45 (2012), 4389-4401.   Google Scholar

[6]

C. Bouveyron and C. Brunet-Saumard, Model-based clustering of high-dimensional data: A review, Computational Statistics & Data Analysis, 71 (2014), 52-78.  doi: 10.1016/j.csda.2012.12.008.  Google Scholar

[7]

R. Gamasaee and M. Zarandi, A new dirichlet process for mining dynamic patterns in functional data, Information Sciences, 405 (2017), 55-80.  doi: 10.1016/j.ins.2017.04.008.  Google Scholar

[8]

S. Har-Peled and B. Sadri, How fast is the $k$-means method?, Algorithmica, 41 (2005), 185-202.  doi: 10.1007/s00453-004-1127-9.  Google Scholar

[9]

J. Jacques and C. Preda, Functional data clustering: A survey, Advances in Data Analysis and Classification, 8 (2014), 231-255.  doi: 10.1007/s11634-013-0158-y.  Google Scholar

[10]

S. Ji, D. Xu, L. Guo, M. Li and D. Zhang, The seeding algorithm for spherical $k$-means clustering with penalties, Journal of Combinatorial Optimization, 2020. doi: 10.1007/s10878-020-00569-1.  Google Scholar

[11]

M. Kayano, K. Dozono and S. Konishi, Functional cluster analysis via orthonormalized Gaussian basis expansions and its application, Journal of Classification, 27 (2010), 211-230.  doi: 10.1007/s00357-010-9054-8.  Google Scholar

[12]

M. Li, The bi-criteria seeding algorithms for two variants of $k$-means problem, Journal of Combinatorial Optimization, 2020. doi: 10.1007/s10878-020-00537-9.  Google Scholar

[13]

M. Li, D. Xu, J. Yue, D. Zhang and P. Zhang, The seeding algorithm for $k$-means problem with penalties, Journal of Combinatorial Optimization, 39 (2020), 15-32.  doi: 10.1007/s10878-019-00450-w.  Google Scholar

[14]

S. Lloyd, Least squares quantization in PCM, IEEE Transactions on Information Theory, 28 (1982), 129-137.  doi: 10.1109/TIT.1982.1056489.  Google Scholar

[15]

Y. Meng, J. Liang, F. Cao and Y. He, A new distance with derivative information for functional $k$-means clustering algorithm, Information Sciences, 463/464 (2018), 166-185.  doi: 10.1016/j.ins.2018.06.035.  Google Scholar

[16]

R. Ostrovsky, Y. Rabani, L. Schulman and C. Swamy, The effectiveness of Lloyd-type methods for the $k$-means problem, Journal of the ACM, 59 (2012), 28: 1–28: 22. doi: 10.1145/2395116.2395117.  Google Scholar

[17]

G. Ozturk and M. Ciftci, Clustering based polyhedral conic functions algorithm in classification, Journal of Industrial & Management Optimization, 11 (2015), 921-932.  doi: 10.3934/jimo.2015.11.921.  Google Scholar

[18]

J. Park and J. Ahn, Clustering multivariate functional data with phase variation, Biometrics, 73 (2017), 324-333.  doi: 10.1111/biom.12546.  Google Scholar

[19]

J. Peng and H. G. Müller, Distance-based clustering of sparsely observed stochastic processes, with applications to online auctions, The Annals of Applied Statistics, 2 (2008), 1056-1077.  doi: 10.1214/08-AOAS172.  Google Scholar

[20]

C. Preda, G. Saporta and C. Lévéder, PLS classification of functional data, Computational Statistics, 22 (2007), 223-235.  doi: 10.1007/s00180-007-0041-4.  Google Scholar

[21]

T. Tarpey and K. K. Kinateder, Clustering functional data, Journal of Classification, 20 (2003), 93-114.  doi: 10.1007/s00357-003-0007-3.  Google Scholar

[22]

D. Wei, A constant-factor bi-criteria approximation guarantee for $k$-means++, Proceedings of the Thirtieth International Conference on Neural Information Processing Systems, (2016), 604–612. Google Scholar

[23]

X. Wu, V. Kumar, J. Quinlan, J. Ross Ghosh, Q. Yang, H. Motoda, G. J. McLachlan, A. Ng, B. Liu, P.S. Yu, Z. H. Zhou, M. Steinbach, D. J. Hand and D. Steinberg, Top 10 algorithms in data mining, Knowledge and Information Systems, 14 (2008), 1-37.  doi: 10.1007/s10115-007-0114-2.  Google Scholar

Table 1.  Notation Index
NotationsMeaning of symbols
$x_i(t)$ or $x_i^j(t)$functional curve
$X(t)$ or $X^i(t)$ or $C^i(t)$$d$-dimensional functional sample with functional curves as its components
$\mathfrak{F}^d(t)$set of $d$-dimensional functional samples
$\Gamma(t)$ or $\Delta(t)$ or $C(t)$subset of $\mathfrak{F}^d(t)$
$\mu(\Gamma(t))$center of mass of functional samples of $\Gamma(t)$
$d(X^i(t), X^j(t))$distance between the functional samples $X^i(t)$ and $X^j(t)$
$d(X^i(t), \Gamma(t))$distance from the functional sample $X^i(t)$ to the subset of functional samples $\Gamma(t)$
$X(t)_{\Gamma(t)}$the closest functional sample in $\Gamma(t)$ to the functional sample $X(t)$
$\Phi(\Gamma(t), C(t))$potential function of $\Gamma(t)$ over $C(t)$
$\Gamma_{C(t)}^i(t)$the $i$-th cluster of $\Gamma(t)$ with respect to $C(t)$
Table Options

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NotationsMeaning of symbols
$x_i(t)$ or $x_i^j(t)$functional curve
$X(t)$ or $X^i(t)$ or $C^i(t)$$d$-dimensional functional sample with functional curves as its components
$\mathfrak{F}^d(t)$set of $d$-dimensional functional samples
$\Gamma(t)$ or $\Delta(t)$ or $C(t)$subset of $\mathfrak{F}^d(t)$
$\mu(\Gamma(t))$center of mass of functional samples of $\Gamma(t)$
$d(X^i(t), X^j(t))$distance between the functional samples $X^i(t)$ and $X^j(t)$
$d(X^i(t), \Gamma(t))$distance from the functional sample $X^i(t)$ to the subset of functional samples $\Gamma(t)$
$X(t)_{\Gamma(t)}$the closest functional sample in $\Gamma(t)$ to the functional sample $X(t)$
$\Phi(\Gamma(t), C(t))$potential function of $\Gamma(t)$ over $C(t)$
$\Gamma_{C(t)}^i(t)$the $i$-th cluster of $\Gamma(t)$ with respect to $C(t)$
Table 2.  Comparison of Algorithm 1 and the functional $ k $-means algorithm in [15]
Data SetMethodARIDBIInitial CostReturned CostTime (s)
SimudataSeedAlg0.79190.86523338168958
FuncAlg0.79750.86565465168961
SdataSeedAlg0.66511.13851667712192
FuncAlg0.65611.13842485720217
Table Options

Download as excel

Data SetMethodARIDBIInitial CostReturned CostTime (s)
SimudataSeedAlg0.79190.86523338168958
FuncAlg0.79750.86565465168961
SdataSeedAlg0.66511.13851667712192
FuncAlg0.65611.13842485720217
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