American Institute of Mathematical Sciences

Advanced
2006, 3(4): 571-582. doi: 10.3934/mbe.2006.3.571

Visualisation of the numerical solution of partial differential equation systems in three space dimensions and its importance for mathematical models in biology

Heiko Enderling 1, , Alexander R.A. Anderson 1, , Mark A.J. Chaplain 1, and  Glenn W.A. Rowe 2,

1. 

Division of Mathematics, University of Dundee, 23 Perth Road, Dundee, DD1 4HN, United Kingdom, United Kingdom, United Kingdom
2. 

Applied Computing, University of Dundee, Dundee, DD1 4HN, United Kingdom

Received  November 2005 Revised  May 2006 Published  August 2006

Numerical analysis and computational simulation of partial differential equation models in mathematical biology are now an integral part of the research in this field. Increasingly we are seeing the development of partial differential equation models in more than one space dimension, and it is therefore necessary to generate a clear and effective visualisation platform between the mathematicians and biologists to communicate the results. The mathematical extension of models to three spatial dimensions from one or two is often a trivial task, whereas the visualisation of the results is more complicated. The scope of this paper is to apply the established marching cubes volume rendering technique to the study of solid tumour growth and invasion, and present an adaptation of the algorithm to speed up the surface rendering from numerical simulation data. As a specific example, in this paper we examine the computational solutions arising from numerical simulation results of a mathematical model of malignant solid tumour growth and invasion in an irregular heterogeneous three-dimensional domain, i.e., the female breast. Due to the different variables that interact with each other, more than one data set may have to be displayed simultaneously, which can be realized through transparency blending. The usefulness of the proposed method for visualisation in a more general context will also be discussed.
Keywords: partial differential equations, visualization, adaptive marching cubes, mathematical model, tumour growth and invasion., transparency blending, visualisation.
Mathematics Subject Classification: 76M27,92B05,92C15,92C5.
Citation: Heiko Enderling, Alexander R.A. Anderson, Mark A.J. Chaplain, Glenn W.A. Rowe. Visualisation of the numerical solution of partial differential equation systems in three space dimensions and its importance for mathematical models in biology. Mathematical Biosciences & Engineering, 2006, 3 (4) : 571-582. doi: 10.3934/mbe.2006.3.571
[1]

Lorenzo Zambotti. A brief and personal history of stochastic partial differential equations. Discrete & Continuous Dynamical Systems - A, 2021, 41 (1) : 471-487. doi: 10.3934/dcds.2020264
[2]

Yueyang Zheng, Jingtao Shi. A stackelberg game of backward stochastic differential equations with partial information. Mathematical Control & Related Fields, 2020  doi: 10.3934/mcrf.2020047
[3]

Laurence Cherfils, Stefania Gatti, Alain Miranville, Rémy Guillevin. Analysis of a model for tumor growth and lactate exchanges in a glioma. Discrete & Continuous Dynamical Systems - S, 2020  doi: 10.3934/dcdss.2020457
[4]

Hua Qiu, Zheng-An Yao. The regularized Boussinesq equations with partial dissipations in dimension two. Electronic Research Archive, 2020, 28 (4) : 1375-1393. doi: 10.3934/era.2020073
[5]

Yining Cao, Chuck Jia, Roger Temam, Joseph Tribbia. Mathematical analysis of a cloud resolving model including the ice microphysics. Discrete & Continuous Dynamical Systems - A, 2021, 41 (1) : 131-167. doi: 10.3934/dcds.2020219
[6]

Martin Kalousek, Joshua Kortum, Anja Schlömerkemper. Mathematical analysis of weak and strong solutions to an evolutionary model for magnetoviscoelasticity. Discrete & Continuous Dynamical Systems - S, 2021, 14 (1) : 17-39. doi: 10.3934/dcdss.2020331
[7]

Fabio Camilli, Giulia Cavagnari, Raul De Maio, Benedetto Piccoli. Superposition principle and schemes for measure differential equations. Kinetic & Related Models, , () : -. doi: 10.3934/krm.2020050
[8]

Li-Bin Liu, Ying Liang, Jian Zhang, Xiaobing Bao. A robust adaptive grid method for singularly perturbed Burger-Huxley equations. Electronic Research Archive, 2020, 28 (4) : 1439-1457. doi: 10.3934/era.2020076
[9]

Siyang Cai, Yongmei Cai, Xuerong Mao. A stochastic differential equation SIS epidemic model with regime switching. Discrete & Continuous Dynamical Systems - B, 2020  doi: 10.3934/dcdsb.2020317
[10]

Stefan Ruschel, Serhiy Yanchuk. The spectrum of delay differential equations with multiple hierarchical large delays. Discrete & Continuous Dynamical Systems - S, 2021, 14 (1) : 151-175. doi: 10.3934/dcdss.2020321
[11]

Thabet Abdeljawad, Mohammad Esmael Samei. Applying quantum calculus for the existence of solution of $ q $-integro-differential equations with three criteria. Discrete & Continuous Dynamical Systems - S, 2020  doi: 10.3934/dcdss.2020440
[12]

Fathalla A. Rihan, Hebatallah J. Alsakaji. Stochastic delay differential equations of three-species prey-predator system with cooperation among prey species. Discrete & Continuous Dynamical Systems - S, 2020  doi: 10.3934/dcdss.2020468
[13]

Sören Bartels, Jakob Keck. Adaptive time stepping in elastoplasticity. Discrete & Continuous Dynamical Systems - S, 2021, 14 (1) : 71-88. doi: 10.3934/dcdss.2020323
[14]

Min Chen, Olivier Goubet, Shenghao Li. Mathematical analysis of bump to bucket problem. Communications on Pure & Applied Analysis, 2020, 19 (12) : 5567-5580. doi: 10.3934/cpaa.2020251
[15]

Andy Hammerlindl, Jana Rodriguez Hertz, Raúl Ures. Ergodicity and partial hyperbolicity on Seifert manifolds. Journal of Modern Dynamics, 2020, 16: 331-348. doi: 10.3934/jmd.2020012
[16]

Vieri Benci, Sunra Mosconi, Marco Squassina. Preface: Applications of mathematical analysis to problems in theoretical physics. Discrete & Continuous Dynamical Systems - S, 2020  doi: 10.3934/dcdss.2020446
[17]

Emre Esentürk, Juan Velazquez. Large time behavior of exchange-driven growth. Discrete & Continuous Dynamical Systems - A, 2021, 41 (2) : 747-775. doi: 10.3934/dcds.2020299
[18]

João Marcos do Ó, Bruno Ribeiro, Bernhard Ruf. Hamiltonian elliptic systems in dimension two with arbitrary and double exponential growth conditions. Discrete & Continuous Dynamical Systems - A, 2021, 41 (1) : 277-296. doi: 10.3934/dcds.2020138
[19]

Ebraheem O. Alzahrani, Muhammad Altaf Khan. Androgen driven evolutionary population dynamics in prostate cancer growth. Discrete & Continuous Dynamical Systems - S, 2020  doi: 10.3934/dcdss.2020426
[20]

Gang Bao, Mingming Zhang, Bin Hu, Peijun Li. An adaptive finite element DtN method for the three-dimensional acoustic scattering problem. Discrete & Continuous Dynamical Systems - B, 2020  doi: 10.3934/dcdsb.2020351

2018 Impact Factor: 1.313

Tools

Metrics

  • PDF downloads (33)
  • HTML views (0)
  • Cited by (9)

Other articles
by authors

[Back to Top]

Copyright © 2020 American Institute of Mathematical Sciences